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Home » Recipes » Breakfast

Vegan Pumpkin Muffins (Gluten-Free!)

Oct 24, 2025 by Kaitlin · 2 Comments

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These easy Vegan Pumpkin Muffins are soft, fluffy, and deliciously spiced with cozy fall flavor. They're naturally sweetened, gluten-free, and perfect for breakfast, snacks, or dessert! (Vegan, gluten-free, refined oil-free.)

Vegan pumpkin muffin with cinnamon sugar topping on a cooling rack after baking

These healthier vegan pumpkin muffins are soft, fluffy, and packed with cozy fall flavor!

They're made with both pumpkin puree and pumpkin pie spice for a delicious taste of autumn. They're also naturally sweetened without any refined oil, butter, or eggs. (And no mixer required!)

For an extra treat, you can fold in chocolate chips or dust them with the optional cinnamon-sugar sprinkle. They're great for breakfast, energizing snacks, or packing in lunchboxes (my daughter's favorite). They're also delicious for a healthy fall dessert.

Oat flour, coconut sugar, applesauce, flax, vanilla extract, and spice ingredients laid out on a metal tray

Ingredients for Vegan Pumpkin Muffins

For this recipe, you'll stir together in a large bowl then bake in the oven:

  • Pumpkin puree: I use canned pumpkin puree which comes in a 15-ounce can. (Be sure to find 100% pure pumpkin, not the canned pumpkin pie filling mix which has added sugar and spices.)
  • Dairy-free milk
  • Pure maple syrup
  • Applesauce: I use unsweetened applesauce.
  • Almond butter: This helps add richness and body. (I like almond butter best for its neutral flavor.) Be sure to use drippy almond butter so it mixes in smoothly.
  • Pure vanilla extract
  • Apple cider vinegar: This brightens the flavor and also reacts with the baking soda to give the muffins a fluffy lift and moist, tender texture. (Don't worry - the flavor bakes off and you won't be able to taste it.)
  • Ground flax seed: Also called flaxseed meal. We'll whisk it with warm water to create a thickened "flax egg" which is a great egg replacer and binder in baked dishes.
  • Gluten-free 1-to-1 baking flour: I use Bob's Red Mill flour blend. You could substitute gluten-free all-purpose flour if that's what you have on hand, but I prefer the texture with the 1-to-1 baking flour.
  • Oat flour: Use certified gluten-free if needed. It's best to weigh the two flours with a kitchen scale if you can, because they can vary a lot by volume. (Find my precise measurements by gram in the "metric" tab in the recipe card.)
  • Pumpkin pie spice: This is a tasty blend of warm, cozy flavors. Pumpkin spice usually combines cinnamon, ginger, cloves, and nutmeg. But it can also include allspice, cardamom, black pepper, etc.
  • Baking powder & baking soda: I use Bob's Red Mill double acting baking powder with no added aluminum. Be sure yours is fresh (not expired) for proper rising.
  • Salt: I use fine grain salt for this recipe.
Overhead view of wet ingredients in a large mixing bowl with whisk

Customizing

Chocolate chips: For a decadent twist, fold in some vegan chocolate chips after the batter rests, right before scooping it into the pan. (Or you could also fold in pecans, pumpkin seeds, raisins, walnuts, or anything else that sounds good.)

Cinnamon-sugar topping: This is optional, but I include a quick recipe for a cinnamon & coconut sugar sprinkle. Feel free to top your muffins with this before baking! Or you could sprinkle them with turbinado sugar (which is more coarse) for extra texture and crunch.

Muffin size: These are small-to-medium muffins made in a standard muffin tin, which yields a dozen. I find with gluten-free & oil-free baking, slightly smaller muffins bake through more evenly resulting in a softer, fluffier texture rather than heavy and gummy.

Overhead view of scooping vegan pumpkin muffin batter in a muffin pan before baking

Serving

Enjoy these healthy pumpkin muffins for breakfast, an energizing afternoon snack, packed in lunchboxes, gift-giving, or even as a healthy dessert.

Storing

Allow your muffins to cool completely for at least an hour before enjoying or storing. The texture will be very soft when they come out of the oven, but gradually firm up as they cool. Then store them in an airtight container at room temperature for 2 days, or in the refrigerator for 5 days.

Freezing: These freeze great. Again, be sure they're fully cooled before storing in a freezer-safe container. Then freeze for 1-2 months. When ready to enjoy, I thaw them overnight in the fridge. Enjoy as is, or reheat in the microwave for about 10 seconds.

More Pumpkin Spice Recipes!

  • Vegan Pumpkin Cookies
  • Pumpkin Spice Granola
  • Vegan Pumpkin Waffles
Vegan pumpkin muffins in a pan after baking

For more inspiration, also browse all vegan fall recipes or breakfast recipes.

Vegan pumpkin muffin with cinnamon sugar topping on a cooling rack after baking

Vegan Pumpkin Muffins (Gluten-Free!)

These pumpkin muffins are soft, fluffy, and deliciously spiced with cozy fall flavor. They're naturally sweetened, gluten-free, and perfect for breakfast, snacks, or dessert!
5 from 1 vote
Print Recipe Pin Recipe Comment
Prep Time: 35 minutes minutes
Cook Time: 25 minutes minutes
Cooling Time: 1 hour hour 10 minutes minutes
Total Time: 2 hours hours 10 minutes minutes
Author: Kaitlin - The Garden Grazer
Course: Breakfast, Dessert, Snack
Cuisine: Gluten-Free, Oil-Free, Vegan
Servings: 12 small/medium muffins

Ingredients

Wet ingredients:

  • 2/3 cup pumpkin puree*
  • 1 Tbsp. dairy-free milk
  • 1/2 cup pure maple syrup
  • 1/4 cup applesauce
  • 1/4 cup almond butter, drippy
  • 2 tsp. pure vanilla extract
  • 2 tsp. apple cider vinegar
  • 2 Tbsp. ground flax + 1/3 cup water

Dry ingredients:

  • 1 cup gluten-free 1-to-1 baking flour**
  • 1/2 cup oat flour (GF if needed)
  • 1 Tbsp. pumpkin pie spice
  • 1 1/2 tsp. baking powder
  • 1/2 tsp. baking soda
  • 1/2 tsp. salt

Cinnamon-sugar sprinkle (optional):

  • 1 Tbsp. coconut sugar
  • 1/4 tsp. ground cinnamon

Instructions

  • Flax egg: Make a flax egg by stirring together the 2 Tbsp. ground flax and 1/3 cup warm water in a small bowl. Set aside for 5-8 minutes to thicken. I give it another stir halfway through. (If using cool water, it takes about 15 minutes to gel, and hot water takes about 2-3 minutes.)
  • Wet ingredients: In a large mixing bowl, add all wet ingredients. Whisk to combine. Then add the thickened flax egg and whisk again.
  • Dry ingredients & rest: In a separate bowl, add all dry ingredients and stir to combine. Then add the dry ingredients to the wet. Stir with a spatula until just combined and no dry pockets remain. (Try to avoid over-mixing.) Set aside and let the batter rest for 15 minutes. This allows the oat flour to absorb moisture which creates a softer, less-crumbly texture.
  • Oven: While the batter rests, preheat your oven to 375°F (190°C). Line a standard 12-cup muffin pan with parchment baking liners.
  • Transfer: After the batter rests, portion the batter evenly throughout the lined cavities. (I use an ice cream scoop with thumb press for easy transferring.)
  • Sugar sprinkle: If using, mix together the coconut sugar and cinnamon. Sprinkle it on top of each muffin (using about 1/4 tsp. for each muffin). Then gently tap down the sugar mixture with your finger to help it better stick to the muffin tops.
  • Bake: Place in the oven and bake for about 22-25 minutes (or until a toothpick comes out mostly clean with a few moist crumbles).
  • Cool: Remove from oven and let the muffins cool in the pan for 10 minutes. Then transfer them to a wire rack and cool for about 60-90 minutes. (This is an important step because they're very soft when hot, but firm up as they cool. They also need to be completely cool before storing.)

Notes

*For best results: Please weigh your pumpkin puree and both flours. Find the gram measurements in the "metric" tab in the recipe card above. It's much more accurate because amounts can vary by volume.
**Flour: I use Bob's Red Mill GF 1-to-1 baking flour. Gluten-free all-purpose could be substituted as well, but I prefer the texture using 1-to-1 flour.
Chocolate variation: Gently fold in vegan chocolate chips to the muffin batter after resting.
Storing: After FULLY cooled, store muffins in a tightly sealed container for 2 days at room temperature, or 5 days in the refrigerator. They also freeze great for about 1-2 months. I thaw them in the fridge overnight. Gently warm them in the microwave for about 10 seconds right before enjoying if desired.
Recipe originally published October 2025. Updated September 2026 with improved texture and method.

Nutrition Per Serving (Estimate)

Nutrition Facts
Vegan Pumpkin Muffins (Gluten-Free!)
Amount per Serving
Calories
140
% Daily Value*
Fat
 
4
g
6
%
Saturated Fat
 
0.4
g
3
%
Polyunsaturated Fat
 
1
g
Monounsaturated Fat
 
2
g
Potassium
 
186
mg
5
%
Carbohydrates
 
23
g
8
%
Fiber
 
3
g
13
%
Sugar
 
10
g
11
%
Protein
 
3
g
6
%
Vitamin A
 
2126
IU
43
%
Vitamin C
 
1
mg
1
%
Calcium
 
76
mg
8
%
Iron
 
1
mg
6
%
* Percent Daily Values are based on a 2000 calorie diet.

Sodium content: This is omitted as I cannot provide an accurate number. I encourage you to calculate your own to provide a much more precise reading based on the exact ingredients, brands, and amounts you're using.

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If you're enjoying this healthy gluten-free vegan pumpkin muffins recipe, also check out:

  • Vegan Chocolate Chip Muffins
  • Vegan Banana Muffins

Follow The Garden Grazer on Instagram, Pinterest, X (Twitter), or Facebook for more updates and inspiration.

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Comments

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    Recipe Rating:




  1. Jennifer says

    October 26, 2025 at 6:06 pm

    5 stars
    Today was a pumpkin spice day!! 😀 I made these right after making your pumpkin cookies...and wow did my kitchen ever smell glorious!! I followed your recipe exactly as written, including the cinnamon-sugar topping. To evenly disperse the sugary topping, I sprinkled 1/4 tsp per muffin, which was perfect. The muffins were moist and flavourful with a perfect amount of sweetness on top. I will likely add some chopped nuts or seeds into the batter next time for a bit of crunch. This is a great recipe for fall!
    What size scoop/disher did you use to distribute the batter?

    Reply
    • Kaitlin says

      October 27, 2025 at 9:18 am

      We've been having lots of pumpkin spice days too! So warm and cozy. Fun to hear these worked out for you and excellent call adding some crunch next time with nuts or seeds! The ice cream scoop I use for these is 2 1/4" or 2 oz. (Specifically the OXO good grips classic ice cream scoop.) So for me, it comes out to 12 medium muffins using 12 full scoops with that scooper. I'll add a note in the recipe so the size is more specific - thank you for asking! Wishing you a restful week and hope you're feeling & recovering well.

      Reply

Hello, I'm Kaitlin!
I share easy, healthy vegan recipes from my Montana kitchen. About Me →

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